Index A | B | C | D | F | G | I | K | L | M | N | O | P | R | S | T | U | V | W A anisotropy_renorm() (in module sgs_tools.geometry.tensor_algebra) antisymmetrise() (in module sgs_tools.geometry.tensor_algebra) B base_fields_dict (in module sgs_tools.io.um) box_kernel() (in module sgs_tools.sgs.filter) C check_filename() (NetCDFWriter method) CoarseGrain (class in sgs_tools.sgs.coarse_grain) compose_vector_components_on_grid() (in module sgs_tools.geometry.staggered_grid) compute() (LeonardThetaTensor method) (LeonardVelocityTensor method) (LillyMinimisation1Model method) (LillyMinimisation2Model method) (LillyMinimisation3Model method) (LillyMinimisationNModel method) (Minimisation method) compute_coeff() (DynamicModel method) (LinCombDynamicModel method) coords() (Grid method) CoordScalar (class in sgs_tools.geometry.grid) D data_ingest_MONC() (in module sgs_tools.io.monc) data_ingest_MONC_on_single_grid() (in module sgs_tools.io.monc) data_ingest_SGS() (in module sgs_tools.io.sgs) data_ingest_UM() (in module sgs_tools.io.um) data_ingest_UM_on_single_grid() (in module sgs_tools.io.um) diff_lin_on_grid() (in module sgs_tools.geometry.staggered_grid) dynamic_anisotropic_SGS_dict (in module sgs_tools.io.um) dynamic_SGS_diag_dict (in module sgs_tools.io.um) dynamic_SGS_dict (in module sgs_tools.io.um) DynamicCaratiCabotModel() (in module sgs_tools.sgs.CaratiCabot) DynamicKosovicModel() (in module sgs_tools.sgs.Kosovic) DynamicModel (class in sgs_tools.sgs.dynamic_sgs_model) DynamicModelProtcol (class in sgs_tools.sgs.dynamic_sgs_model) F field() (ScalarGradient method) field_plot_kwargs (class in sgs_tools.plotting.field_plot_map) Filter (class in sgs_tools.sgs.filter) filter() (CoarseGrain method) (Filter method) (IdentityFilter method) filter_dims (Filter attribute) Fluct_TKE() (in module sgs_tools.physics.fields) Frobenius_norm() (in module sgs_tools.geometry.tensor_algebra) G get_grid_spacing_coord() (in module sgs_tools.geometry.staggered_grid) grad_on_cart_grid() (in module sgs_tools.geometry.staggered_grid) grad_scalar() (in module sgs_tools.geometry.vector_calculus) grad_vec_on_grid() (in module sgs_tools.geometry.staggered_grid) grad_vector() (in module sgs_tools.geometry.vector_calculus) grad_vector_lin() (in module sgs_tools.geometry.vector_calculus) Grid (class in sgs_tools.geometry.grid) I IdentityFilter (class in sgs_tools.sgs.filter) interpolate_to_grid() (in module sgs_tools.geometry.staggered_grid) K kernel (Filter attribute) L LeonardTensor (class in sgs_tools.sgs.dynamic_sgs_model) LeonardThetaTensor (class in sgs_tools.sgs.dynamic_sgs_model) LeonardVelocityTensor (class in sgs_tools.sgs.dynamic_sgs_model) LillyMinimisation1Model (class in sgs_tools.sgs.dynamic_coefficient) LillyMinimisation2Model (class in sgs_tools.sgs.dynamic_coefficient) LillyMinimisation3Model (class in sgs_tools.sgs.dynamic_coefficient) LillyMinimisationNModel (class in sgs_tools.sgs.dynamic_coefficient) LinCombDynamicModel (class in sgs_tools.sgs.dynamic_sgs_model) LinCombSGSModel (class in sgs_tools.sgs.sgs_model) M M_Germano_tensor() (in module sgs_tools.sgs.dynamic_sgs_model) mesh() (Grid method) Minimisation (class in sgs_tools.sgs.dynamic_coefficient) module sgs_tools.diagnostics.anisotropy sgs_tools.diagnostics.directional_profile sgs_tools.diagnostics.spectra sgs_tools.geometry.grid sgs_tools.geometry.staggered_grid sgs_tools.geometry.tensor_algebra sgs_tools.geometry.vector_calculus sgs_tools.io.monc sgs_tools.io.netcdf_writer sgs_tools.io.read sgs_tools.io.sgs sgs_tools.io.um sgs_tools.physics.fields sgs_tools.plotting.collection_plots sgs_tools.plotting.field_plot_map sgs_tools.sgs.CaratiCabot sgs_tools.sgs.coarse_grain sgs_tools.sgs.dynamic_coefficient sgs_tools.sgs.dynamic_sgs_model sgs_tools.sgs.filter sgs_tools.sgs.Kosovic sgs_tools.sgs.sgs_model sgs_tools.sgs.Smagorinsky sgs_tools.simple_flows.SimpleShear N NetCDFWriter (class in sgs_tools.io.netcdf_writer) NVelocityModel (class in sgs_tools.sgs.CaratiCabot) O omega_from_vel() (in module sgs_tools.physics.fields) P plot_horizontal_slice_tseries() (in module sgs_tools.plotting.collection_plots) plot_vertical_prof_time_slice_compare_fields() (in module sgs_tools.plotting.collection_plots) plot_vertical_prof_time_slice_compare_sims_slice() (in module sgs_tools.plotting.collection_plots) R radial_spectrum() (in module sgs_tools.diagnostics.spectra) read() (in module sgs_tools.io.read) read_stash_files() (in module sgs_tools.io.um) rename_variables() (in module sgs_tools.io.um) Reynolds_fluct_stress() (in module sgs_tools.physics.fields) S s_parallel() (in module sgs_tools.sgs.CaratiCabot) s_perpendicular() (in module sgs_tools.sgs.CaratiCabot) ScalarGradient (class in sgs_tools.simple_flows.SimpleShear) scale() (Filter method) scales() (Filter method) sgs_tensor() (DynamicModel method) (LinCombDynamicModel method) (NVelocityModel method) (SGSModel method) (SmagorinskyHeatModel method) (SmagorinskyVelocityModel method) (SOmegaVelocityModel method) (SparallelVelocityModel method) (SperpVelocityModel method) (SSquaredVelocityModel method) sgs_tools.diagnostics.anisotropy module sgs_tools.diagnostics.directional_profile module sgs_tools.diagnostics.spectra module sgs_tools.geometry.grid module sgs_tools.geometry.staggered_grid module sgs_tools.geometry.tensor_algebra module sgs_tools.geometry.vector_calculus module sgs_tools.io.monc module sgs_tools.io.netcdf_writer module sgs_tools.io.read module sgs_tools.io.sgs module sgs_tools.io.um module sgs_tools.physics.fields module sgs_tools.plotting.collection_plots module sgs_tools.plotting.field_plot_map module sgs_tools.sgs.CaratiCabot module sgs_tools.sgs.coarse_grain module sgs_tools.sgs.dynamic_coefficient module sgs_tools.sgs.dynamic_sgs_model module sgs_tools.sgs.filter module sgs_tools.sgs.Kosovic module sgs_tools.sgs.sgs_model module sgs_tools.sgs.Smagorinsky module sgs_tools.simple_flows.SimpleShear module SGSModel (class in sgs_tools.sgs.sgs_model) SimpleShear (class in sgs_tools.simple_flows.SimpleShear) Smagorinsky_dict (in module sgs_tools.io.um) SmagorinskyHeatModel (class in sgs_tools.sgs.Smagorinsky) SmagorinskyVelocityModel (class in sgs_tools.sgs.Smagorinsky) SOmegaVelocityModel (class in sgs_tools.sgs.Kosovic) SparallelVelocityModel (class in sgs_tools.sgs.CaratiCabot) spectra_1d_radial() (in module sgs_tools.diagnostics.spectra) SperpVelocityModel (class in sgs_tools.sgs.CaratiCabot) SSquaredVelocityModel (class in sgs_tools.sgs.Kosovic) strain_from_vel() (in module sgs_tools.physics.fields) symmetrise() (in module sgs_tools.geometry.tensor_algebra) T tensor_self_outer_product() (in module sgs_tools.geometry.tensor_algebra) trace() (in module sgs_tools.geometry.tensor_algebra) traceless() (in module sgs_tools.geometry.tensor_algebra) U UniformCartesianGrid (class in sgs_tools.geometry.grid) unify_coords() (in module sgs_tools.io.um) V velocity() (SimpleShear method) vertical_heat_flux() (in module sgs_tools.physics.fields) W Water_dict (in module sgs_tools.io.um) weight_gauss_3d (in module sgs_tools.sgs.filter) weight_gauss_5d (in module sgs_tools.sgs.filter) with_dims() (Filter method) write() (NetCDFWriter method)